PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 261aa    MW: 30044.1 Da    PI: 6.2354
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l + +  +G  +W+++++  g+ R++k+c++rw +yl
   XP_013588661.1 14 KGPWSADEDRKLMNFILTHGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding52.51.2e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++  +d++ qlG++ W++Ia++++ gRt++++k++w+++
   XP_013588661.1  71 SDHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      789***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.44961IPR017930Myb domain
SuperFamilySSF466896.74E-2711108IPR009057Homeodomain-like
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
CDDcd001676.05E-81661No hitNo description
PROSITE profilePS5129425.41562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2463116IPR009057Homeodomain-like
SMARTSM007175.4E-1566114IPR001005SANT/Myb domain
PfamPF002498.1E-1471111IPR001005SANT/Myb domain
CDDcd001679.76E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWSAD EDRKLMNFIL THGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPLTHKPLS IVEQEEEKPL KKLQKPMEQT AEEPTNDCLT KDSNSKNMFM AMNLEYGVEE  180
VPTIDPECLE LICNNSPTSS SSSNESSILK DFQFPDFDWS DYGIDNNNHH NNNGVDNIME  240
NNVMSLWDVD DFSSWDLCNI I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195651e-165AY519565.1 Arabidopsis thaliana MYB transcription factor (At1g66230) mRNA, complete cds.
GenBankBT0289041e-165BT028904.1 Arabidopsis thaliana unknown protein (At1g66230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588661.10.0PREDICTED: protein ODORANT1
TrEMBLA0A0D3CYC40.0A0A0D3CYC4_BRAOL; Uncharacterized protein
STRINGBra004155.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.11e-116myb domain protein 20